MolNFT v1 · #124107 · protein + DNA
Homo sapiens ccctc-binding factor (ctcf) ZNF5-8 and DNA complex structure in space group P41212
5K5J: “Homo sapiens ccctc-binding factor (ctcf) ZNF5-8 and DNA complex structure in space group P41212”. X-ray diffraction, 2 ligands (ZN, SO4). MolNFT v1 #124107 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5K5J
- Type
- protein + DNA
- Length
- 140 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- P49711
- Ligands
- ZN, SO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 114 | — | P49711 |
| B | — | dna | 13 | — | — |
| C | — | dna | 13 | — | — |
Ligands and binding sites
- ZN · Zinc ion · metal · 4 copies · chains A
- SO4 · Sulfate ion · ion · chains A, B
- ACT · Acetate ion · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5K5J · Homo sapiens CCCTC-binding factor (CTCF) ZnF5-8 and DNA complex structure in space group… · the same entry in another collection · chain A against A, TM-score 1.00
- P49711 · AlphaFold monomer V2.0 prediction for transcriptional repressor ctcf (P49711) · a predicted model of the same protein · chain A against A, TM-score 0.78
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P49711
- Elsewhere: RCSB PDB 5K5J · PDBe 5K5J · UniProt P49711
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.