MolNFT v1 · #123979 · protein
Crystal structure of the UAF1/WDR20/USP12 complex
5K1C: “Crystal structure of the UAF1/WDR20/USP12 complex”. X-ray diffraction, 3 ligands (TAM, ZN, PO4). MolNFT v1 #123979 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5K1C
- Type
- protein
- Length
- 1,224 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- UniProt
- O75317, Q8TAF3, Q8TBZ3
- Ligands
- TAM, ZN, PO4
Structure
x-ray diffraction · 3 distinct chains.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | — | protein | 302 | — | O75317 |
| B | — | protein | 515 | — | Q8TAF3 |
| C | — | protein | 407 | — | Q8TBZ3 |
Ligands and binding sites
- TAM · Tris(hydroxyethyl)aminomethane · ligand · chains C
- ZN · Zinc ion · metal · chains A
- PO4 · Phosphate ion · ion · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5K1C · Crystal structure of the UAF1/WDR20/USP12 complex · the same entry in another collection · chain A against A, TM-score 1.00
- Q8TAF3 · AlphaFold monomer V2.0 prediction for wd repeat-containing protein 48 (Q8TAF3) · a predicted model of the same protein · chain B against A, TM-score 0.99
- Q8TBZ3 · AlphaFold monomer V2.0 prediction for wd repeat-containing protein 20 (Q8TBZ3) · a predicted model of the same protein · chain C against A, TM-score 0.97
- O75317 · AlphaFold monomer V2.0 prediction for ubiquitin carboxyl-terminal hydrolase 12 (O75317) · a predicted model of the same protein · chain A against A, TM-score 0.93
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O75317
- Every structure of UniProt Q8TAF3
- Every structure of UniProt Q8TBZ3
- Elsewhere: RCSB PDB 5K1C · PDBe 5K1C · UniProt O75317 · UniProt Q8TAF3 · UniProt Q8TBZ3
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