MolNFT v1 · #123836 · protein
T4 lysozyme L99A/M102Q with 1,2-dihydro-1,2-azaborine bound
5JWU · Endolysin: “T4 lysozyme L99A/M102Q with 1,2-dihydro-1,2-azaborine bound”. X-ray diffraction, 2 ligands (B20, CL), 2 pockets (best druggability 0.72). MolNFT v1 #123836 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5JWU
- Type
- protein
- Length
- 161 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endolysin
- EC
- 3.2.1.17
- UniProt
- P00720
- Ligands
- B20, CL
- Pockets
- 2 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 60% helix, 9% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endolysin (EC 3.2.1.17) | protein | 161 | 60% helix, 9% strand | P00720 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 98 | 0.72 | 0.94 | 20 | B20 |
| 2 | 267 | 0.54 | 0.76 | 30 | empty |
Compared structures
- 5JWU · T4 Lysozyme L99A/M102Q with 1,2-Dihydro-1,2-azaborine Bound · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00720
- Elsewhere: RCSB PDB 5JWU · PDBe 5JWU · UniProt P00720
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