MolNFT v1 · #123590 · protein

Crystal structure of S. pombe DCP1 in complex with the decapping enhancer edc

5JP4 · MRNA-decapping enzyme subunit 1: “Crystal structure of S. pombe DCP1 in complex with the decapping enhancer edc”. X-ray diffraction. MolNFT v1 #123590 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5JP4
Type: protein
Length: 145 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MRNA-decapping enzyme subunit 1; Uncharacterized protein C18G6.09C
UniProt: Q9P805, Q10108

Structure

x-ray diffraction · 2 distinct chains · 26% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MRNA-decapping enzyme subunit 1	protein	126	28% helix, 48% strand	Q9P805
B	Uncharacterized protein C18G6.09C	protein	19	16% helix, 21% strand	Q10108

Interfaces

1 interface between chains.

A–B · 793 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

5JP4 · Crystal structure of S. pombe Dcp1 in complex with the decapping enhancer EDC · the same entry in another collection · chain A against A, TM-score 1.00
Q9P805 · AlphaFold monomer V2.0 prediction for mRNA-decapping enzyme subunit 1 (Q9P805) · a predicted model of the same protein · chain A against A, TM-score 0.96
Q10108 · AlphaFold monomer V2.0 prediction for uncharacterized protein C18G6.09C (Q10108) · a predicted model of the same protein · chain B against A, TM-score 0.44

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9P805
Every structure of UniProt Q10108
Elsewhere: RCSB PDB 5JP4 · PDBe 5JP4 · UniProt Q9P805 · UniProt Q10108

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.