Research workbench

Crystal structure of S. pombe DCP1 in complex with the decapping enhancer edc

Analyse Crystal structure of S. pombe DCP1 in complex with the decapping enhancer edc in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5JP4
Type: protein
Length: 145 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MRNA-decapping enzyme subunit 1; Uncharacterized protein C18G6.09C
UniProt: Q9P805, Q10108

Structure

x-ray diffraction · 2 distinct chains · 26% helix, 45% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MRNA-decapping enzyme subunit 1	protein	126	28% helix, 48% strand	Q9P805
B	Uncharacterized protein C18G6.09C	protein	19	16% helix, 21% strand	Q10108

Interfaces

1 interface between chains.

A–B · 793 Å² buried · 7 hydrogen bonds · protein-protein

Compared structures

5JP4 · Crystal structure of S. pombe Dcp1 in complex with the decapping enhancer EDC · the same entry in another collection · chain A against A, TM-score 1.00
Q9P805 · AlphaFold monomer V2.0 prediction for mRNA-decapping enzyme subunit 1 (Q9P805) · a predicted model of the same protein · chain A against A, TM-score 0.96
Q10108 · AlphaFold monomer V2.0 prediction for uncharacterized protein C18G6.09C (Q10108) · a predicted model of the same protein · chain B against A, TM-score 0.44

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9P805
Every structure of UniProt Q10108
Elsewhere: RCSB PDB 5JP4 · PDBe 5JP4 · UniProt Q9P805 · UniProt Q10108

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.