MolNFT v1 · #123582 · protein
Bacteroides ovatus xyloglucan pul GH43A
5JOW · Non-reducing end alpha-L-arabinofuranosidase BOGH43A: “Bacteroides ovatus xyloglucan pul GH43A”. X-ray diffraction, 12 pockets (best druggability 0.78). MolNFT v1 #123582 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5JOW
- Type
- protein
- Length
- 1,008 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Non-reducing end alpha-L-arabinofuranosidase BOGH43A
- EC
- 3.2.1.55
- UniProt
- A7LXT8
- Pockets
- 12 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 5% helix, 50% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Non-reducing end alpha-L-arabinofuranosidase BOGH43A (EC 3.2.1.55) | protein | 504 | 5% helix, 50% strand | A7LXT8 |
Ligands and binding sites
- EDO · 1,2-ethanediol · additive · 23 copies · chains A, B
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
12 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 857 | 0.78 | 0.81 | 93 | TRS, EDO |
| 2 | 415 | 0.61 | 0.76 | 46 | EDO |
| 3 | 374 | 0.61 | 0.77 | 39 | empty |
| 4 | 246 | 0.55 | 0.77 | 20 | EDO |
| 5 | 223 | 0.54 | 0.77 | 20 | EDO |
Interfaces
1 interface between chains.
- A–B · 1329 Ų buried · 16 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A7LXT8
- Elsewhere: RCSB PDB 5JOW · PDBe 5JOW · UniProt A7LXT8
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