MolNFT v1 · #123543 · protein

Crystal structure of abscisic acid receptor PYL2 in complex with phaseic acid.

5JNN: “Crystal structure of abscisic acid receptor PYL2 in complex with phaseic acid.”. X-ray diffraction, 1 ligand (6LM), 1 pocket (best druggability 0.82). MolNFT v1 #123543 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5JNN
Type: protein
Length: 175 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Abscisic acid receptor PYL2
UniProt: O80992
Ligands: 6LM
Pockets: 1 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 27% helix, 37% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Abscisic acid receptor PYL2	protein	175	27% helix, 37% strand	O80992

Ligands and binding sites

6LM · (3S,4E)-5-[(1R,5R,8S)-8-hydroxy-1,5-dimethyl-3-oxo-6-oxabicyclo[3.2.1]octan-8-yl]-3-methylpent-4-enoic acid · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	270	0.82	0.93	27	6LM

Compared structures

5JNN · Crystal structure of abscisic acid receptor PYL2 in complex with Phaseic acid. · the same entry in another collection · chain A against A, TM-score 1.00
O80992 · AlphaFold monomer V2.0 prediction for abscisic acid receptor PYL2 (O80992) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O80992
Elsewhere: RCSB PDB 5JNN · PDBe 5JNN · UniProt O80992

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