MolNFT v1 · #123444 · protein

Chromo domain of human chromodomain protein, Y-like 2

5JJZ · Chromodomain Y-like protein 2: “Chromo domain of human chromodomain protein, Y-like 2”. X-ray diffraction. MolNFT v1 #123444 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5JJZ
Type: protein
Length: 63 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Chromodomain Y-like protein 2; Lys-lys-lys-ala-arg-mly-ser-ala-gly-ala-ala-lys-tyr
UniProt: Q8N8U2

Structure

x-ray diffraction · 2 distinct chains · 10% helix, 48% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Chromodomain Y-like protein 2	protein	59	10% helix, 51% strand	Q8N8U2
B	Lys-lys-lys-ala-arg-mly-ser-ala-gly-ala-ala-lys-tyr	protein	4	0% helix, 0% strand	—

Interfaces

1 interface between chains.

A–B · 256 Å² buried · 3 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 modified (methylation).

Compared structures

5JJZ · Chromo domain of human Chromodomain Protein, Y-Like 2 · the same entry in another collection · chain A against A, TM-score 1.00
Q8N8U2 · AlphaFold monomer V2.0 prediction for chromodomain Y-like protein 2 (Q8N8U2) · a predicted model of the same protein · chain A against A, TM-score 0.68

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8N8U2
Elsewhere: RCSB PDB 5JJZ · PDBe 5JJZ · UniProt Q8N8U2

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