MolNFT v1 · #123392 · protein

Crytsal structure of WSS1 from S. pombe

5JIG · Ubiquitin and wlm domain-containing metalloprotease…: “Crytsal structure of WSS1 from S. pombe”. X-ray diffraction, 2 ligands (NI, OXY). MolNFT v1 #123392 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5JIG
Type: protein
Length: 118 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Ubiquitin and wlm domain-containing metalloprotease SPCC1442.07C
EC: 3.4.24.-
UniProt: O94580
Ligands: NI, OXY

Structure

x-ray diffraction · 1 distinct chain · 42% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Ubiquitin and wlm domain-containing metalloprotease SPCC1442.07C (EC 3.4.24.-)	protein	118	42% helix, 19% strand	O94580

Ligands and binding sites

NI · Nickel (II) ion · metal · chains A
OXY · Oxygen molecule · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Compared structures

5JIG · Crytsal structure of Wss1 from S. pombe · the same entry in another collection · chain A against A, TM-score 1.00
O94580 · AlphaFold monomer V2.0 prediction for DNA-dependent metalloprotease WSS1 homolog 2… · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt O94580
Elsewhere: RCSB PDB 5JIG · PDBe 5JIG · UniProt O94580

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