MolNFT v1 · #123372 · protein
Crystal structure of the GDF11:FOLLISTATIN 288 complex
5JHW · GROWTH/DIFFERENTIATION factor 11: “Crystal structure of the GDF11:FOLLISTATIN 288 complex”. X-ray diffraction, 1 ligand (PO4), 13 pockets (best druggability 0.71). MolNFT v1 #123372 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5JHW
- Type
- protein
- Length
- 784 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GROWTH/DIFFERENTIATION factor 11; Follistatin
- UniProt
- O95390, P19883
- Ligands
- PO4
- Pockets
- 13 · best druggability 0.71
Structure
x-ray diffraction · 3 distinct chains · 16% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | GROWTH/DIFFERENTIATION factor 11 | protein | 109 | 11% helix, 45% strand | O95390 |
| C | Follistatin | protein | 282 | 17% helix, 27% strand | P19883 |
| D | Follistatin | protein | 284 | 16% helix, 27% strand | P19883 |
Ligands and binding sites
- PO4 · Phosphate ion · ion · 3 copies · chains A, D, C
- FLC · Citrate anion · additive · 7 copies · chains A, D, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
13 pockets found on a 1 Å grid, 11 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 687 | 0.71 | 0.78 | 73 | FLC |
| 2 | 761 | 0.71 | 0.77 | 79 | FLC |
| 3 | 672 | 0.65 | 0.75 | 70 | empty |
| 4 | 196 | 0.60 | 0.81 | 25 | empty |
| 5 | 210 | 0.59 | 0.80 | 35 | FLC |
Interfaces
6 interfaces between chains.
- A–D · 1751 Ų buried · 21 hydrogen bonds · protein-protein
- B–C · 1706 Ų buried · 25 hydrogen bonds · protein-protein
- A–B · 1226 Ų buried · 10 hydrogen bonds · protein-protein
- C–D · 685 Ų buried · 8 hydrogen bonds · protein-protein
- B–D · 417 Ų buried · 3 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 45 disulfide (disulfide).
Compared structures
- 5JHW · Crystal Structure of the GDF11:Follistatin 288 complex · the same entry in another collection · chain D against D, TM-score 1.00
- P19883 · AlphaFold monomer V2.0 prediction for follistatin (P19883) · a predicted model of the same protein · chain C against A, TM-score 0.98
- O95390 · AlphaFold monomer V2.0 prediction for GROWTH/DIFFERENTIATION factor 11 (O95390) · a predicted model of the same protein · chain A against A, TM-score 0.78
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O95390
- Every structure of UniProt P19883
- Elsewhere: RCSB PDB 5JHW · PDBe 5JHW · UniProt O95390 · UniProt P19883
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