MolNFT v1 · #123226 · protein
Crystal structure of the DNA binding domain of SAP1 in fission yeast S.POMBE
5JDK · Switch-activating protein 1: “Crystal structure of the DNA binding domain of SAP1 in fission yeast S.POMBE”. X-ray diffraction, 1 pocket (best druggability 0.35). MolNFT v1 #123226 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5JDK
- Type
- protein
- Length
- 104 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Switch-activating protein 1
- UniProt
- P40847
- Pockets
- 1 · best druggability 0.35
Structure
x-ray diffraction · 1 distinct chain · 75% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Switch-activating protein 1 | protein | 104 | 75% helix, 0% strand | P40847 |
Ligands and binding sites
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 84 | 0.35 | 0.75 | 17 | GOL |
Compared structures
- 5JDK · Crystal structure of the DNA binding domain of Sap1 in fission yeast S.pombe · the same entry in another collection · chain A against A, TM-score 1.00
- P40847 · AlphaFold monomer V2.0 prediction for switch-activating protein 1 (P40847) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P40847
- Elsewhere: RCSB PDB 5JDK · PDBe 5JDK · UniProt P40847
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