MolNFT v1 · #122890 · protein

Prv UL37 N-terminal half (R2 mutant)

5J2Z: “Prv UL37 N-terminal half (R2 mutant)”. X-ray diffraction, 3 ligands (CA, NA, CL), 4 pockets (best druggability 0.63). MolNFT v1 #122890 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5J2Z
Type: protein
Length: 479 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: UL37
UniProt: Q911W0
Ligands: CA, NA, CL
Pockets: 4 · best druggability 0.63

Structure

x-ray diffraction · 1 distinct chain · 65% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	UL37	protein	479	65% helix, 1% strand	Q911W0

Ligands and binding sites

CA · Calcium ion · metal · 10 copies · chains A
NA · Sodium ion · metal · 2 copies · chains A
CL · Chloride ion · ion · 3 copies · chains A
ACT · Acetate ion · additive · 4 copies · chains A
PE8 · 3,6,9,12,15,18,21-heptaoxatricosane-1,23-diol · additive · chains A
PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	74	0.63	0.91	22	empty
2	151	0.53	0.80	30	empty
3	101	0.44	0.78	17	empty
4	63	0.28	0.73	15	CL

Compared structures

5J2Z · PRV UL37 N-terminal half (R2 mutant) · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q911W0
Elsewhere: RCSB PDB 5J2Z · PDBe 5J2Z · UniProt Q911W0

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