MolNFT v1 · #122861 · protein
Crystal structure of a 53BP1 tudor domain in complex with a ubiquitin variant
5J26 · Ubiquitin variant I53: “Crystal structure of a 53BP1 tudor domain in complex with a ubiquitin variant”. X-ray diffraction. MolNFT v1 #122861 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5J26
- Type
- protein
- Length
- 190 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ubiquitin variant I53; Tumor suppressor P53-binding protein 1
- UniProt
- Q12888
Structure
x-ray diffraction · 2 distinct chains · 18% helix, 44% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B | Ubiquitin variant I53 | protein | 76 | 25% helix, 34% strand | — |
| A | Tumor suppressor P53-binding protein 1 | protein | 114 | 13% helix, 51% strand | Q12888 |
Interfaces
1 interface between chains.
- B–A · 730 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 5J26 · Crystal structure of a 53BP1 Tudor domain in complex with a ubiquitin variant · the same entry in another collection · chain B against B, TM-score 1.00
- Q12888 · AlphaFold monomer V2.0 prediction for TP53-binding protein 1 (Q12888) · a predicted model of the same protein · chain A against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q12888
- Elsewhere: RCSB PDB 5J26 · PDBe 5J26 · UniProt Q12888
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