MolNFT v1 · #122750 · protein

ALGE_CIM

5IYU · Alginate production protein alge: “ALGE_CIM”. X-ray diffraction, 1 ligand (NA), 2 pockets (best druggability 0.75). MolNFT v1 #122750 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5IYU
Type: protein
Length: 429 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Alginate production protein alge
UniProt: P18895
Ligands: NA
Pockets: 2 · best druggability 0.75

Structure

x-ray diffraction · 1 distinct chain · 1% helix, 57% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Alginate production protein alge	protein	429	1% helix, 57% strand	P18895

Ligands and binding sites

NA · Sodium ion · metal · chains A
LDA · Lauryl dimethylamine-N-oxide · additive · 2 copies · chains A
PE5 · 3,6,9,12,15,18,21,24-octaoxahexacosan-1-ol · additive · 2 copies · chains A
OLC · (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	821	0.75	0.80	75	PE5
2	611	0.71	0.80	63	empty

Compared structures

5IYU · AlgE_CIM · the same entry in another collection · chain A against A, TM-score 1.00
P18895 · AlphaFold monomer V2.0 prediction for alginate production protein alge (P18895) · a predicted model of the same protein · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P18895
Elsewhere: RCSB PDB 5IYU · PDBe 5IYU · UniProt P18895

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