MolNFT v1 · #122296 · protein

Crystal structure of the hathewaya histolytica colg tandem collagen- binding domain S3AS3B in the presence of calcium at 1.9 ångström resolution

5IKU · Collagenase: “Crystal structure of the hathewaya histolytica colg tandem collagen- binding domain S3AS3B in the presence of…”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.54). MolNFT v1 #122296 on GenesisL1: 3D…

PDB: 5IKU
Type: protein
Length: 240 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Collagenase
UniProt: Q9X721
Ligands: CA
Pockets: 1 · best druggability 0.54

Structure

x-ray diffraction · 1 distinct chain · 3% helix, 57% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Collagenase	protein	240	3% helix, 57% strand	Q9X721

Ligands and binding sites

CA · Calcium ion · metal · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	203	0.54	0.78	32	empty

Compared structures

5IKU · Crystal structure of the Hathewaya histolytica ColG tandem collagen-binding domain s3as3b… · the same entry in another collection · chain A against A, TM-score 1.00
Q9X721 · AlphaFold monomer V2.0 prediction for collagenase colg (Q9X721) · a predicted model of the same protein · chain A against A, TM-score 0.92

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9X721
Elsewhere: RCSB PDB 5IKU · PDBe 5IKU · UniProt Q9X721

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