MolNFT v1 · #122236 · protein
Crystal structure of equine serum albumin in the presence of 50 mm zinc at pH 4.5
5IJ5: “Crystal structure of equine serum albumin in the presence of 50 mm zinc at pH 4.5”. X-ray diffraction, 1 ligand (ZN), 12 pockets (best druggability 0.80). MolNFT v1 #122236 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5IJ5
- Type
- protein
- Length
- 581 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Serum albumin
- UniProt
- P35747
- Ligands
- ZN
- Pockets
- 12 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 75% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serum albumin | protein | 581 | 75% helix, 0% strand | P35747 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
12 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 558 | 0.80 | 0.86 | 61 | ZN |
| 2 | 882 | 0.78 | 0.80 | 64 | ZN |
| 3 | 143 | 0.69 | 0.89 | 26 | empty |
| 4 | 141 | 0.66 | 0.88 | 24 | empty |
| 5 | 199 | 0.57 | 0.80 | 26 | empty |
Modifications
Observed in the structure: 17 disulfide (disulfide).
Compared structures
- 5IJ5 · Crystal structure of Equine Serum Albumin in the presence of 50 mM zinc at pH 4.5 · the same entry in another collection · chain A against A, TM-score 1.00
- P35747 · AlphaFold monomer V2.0 prediction for albumin (P35747) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35747
- Elsewhere: RCSB PDB 5IJ5 · PDBe 5IJ5 · UniProt P35747
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