Research workbench
Crystal structure of equine serum albumin in the presence of 50 mm zinc at pH 4.5
Analyse Crystal structure of equine serum albumin in the presence of 50 mm zinc at pH… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- PDB
- 5IJ5
- Type
- protein
- Length
- 581 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Serum albumin
- UniProt
- P35747
- Ligands
- ZN
- Pockets
- 12 · best druggability 0.80
Structure
x-ray diffraction · 1 distinct chain · 75% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Serum albumin | protein | 581 | 75% helix, 0% strand | P35747 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
12 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 558 | 0.80 | 0.86 | 61 | ZN |
| 2 | 882 | 0.78 | 0.80 | 64 | ZN |
| 3 | 143 | 0.69 | 0.89 | 26 | empty |
| 4 | 141 | 0.66 | 0.88 | 24 | empty |
| 5 | 199 | 0.57 | 0.80 | 26 | empty |
Modifications
Observed in the structure: 17 disulfide (disulfide).
Compared structures
- 5IJ5 · Crystal structure of Equine Serum Albumin in the presence of 50 mM zinc at pH 4.5 · the same entry in another collection · chain A against A, TM-score 1.00
- P35747 · AlphaFold monomer V2.0 prediction for albumin (P35747) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P35747
- Elsewhere: RCSB PDB 5IJ5 · PDBe 5IJ5 · UniProt P35747
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.