MolNFT v1 · #122199 · protein
Crystal structure of red abalone verl repeat 1 with linker at 2.0 a resolution
5II4 · Maltose-binding periplasmic PROTEIN,VITELLINE envelope…: “Crystal structure of red abalone verl repeat 1 with linker at 2.0 a resolution”. X-ray diffraction, 1 ligand (GLC), 4 pockets (best druggability 0.72). MolNFT v1 #122199 on…
- PDB
- 5II4
- Type
- protein
- Length
- 477 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Maltose-binding periplasmic PROTEIN,VITELLINE envelope sperm lysin receptor
- UniProt
- P0AEY0, Q8WR62
- Ligands
- GLC
- Pockets
- 4 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Maltose-binding periplasmic PROTEIN,VITELLINE envelope sperm lysin receptor | protein | 477 | 36% helix, 28% strand | P0AEY0, Q8WR62 |
Ligands and binding sites
- GLC · alpha-D-glucopyranose · sugar · 2 copies · chains A
- PGE · Triethylene glycol · additive · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 285 | 0.72 | 0.85 | 32 | GLC |
| 2 | 273 | 0.59 | 0.79 | 32 | PGE |
| 3 | 221 | 0.55 | 0.78 | 32 | empty |
| 4 | 240 | 0.54 | 0.77 | 27 | empty |
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 5II4 · Crystal structure of red abalone VERL repeat 1 with linker at 2.0 A resolution · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P0AEY0
- Every structure of UniProt Q8WR62
- Elsewhere: RCSB PDB 5II4 · PDBe 5II4 · UniProt P0AEY0 · UniProt Q8WR62
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