MolNFT v1 · #121959 · protein
NMR structure of UHRF1 tandem tudor domains in a complex with spacer peptide
5IAY · E3 ubiquitin-protein ligase UHRF1: “NMR structure of UHRF1 tandem tudor domains in a complex with spacer peptide”. Solution nmr, 3 pockets (best druggability 0.33). MolNFT v1 #121959 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5IAY
- Type
- protein
- Length
- 168 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- E3 ubiquitin-protein ligase UHRF1; Spacer
- EC
- 6.3.2.-
- UniProt
- Q96T88
- Pockets
- 3 · best druggability 0.33
Structure
solution nmr · 2 distinct chains · 7% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | E3 ubiquitin-protein ligase UHRF1 (EC 6.3.2.-) | protein | 152 | 8% helix, 43% strand | Q96T88 |
| B | Spacer | protein | 16 | 0% helix, 0% strand | — |
Pockets
3 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 55 | 0.33 | 0.77 | 17 | empty |
| 2 | 62 | 0.31 | 0.75 | 14 | empty |
| 3 | 58 | 0.28 | 0.74 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 591 Ų buried · 20 hydrogen bonds · protein-protein
Compared structures
- 5IAY · NMR structure of UHRF1 Tandem Tudor Domains in a complex with Spacer peptide · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q96T88
- Elsewhere: RCSB PDB 5IAY · PDBe 5IAY · UniProt Q96T88
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