MolNFT v1 · #121761 · protein

Structure of apo omomyc

5I4Z · Myc proto-oncogene protein: “Structure of apo omomyc”. X-ray diffraction, 2 ligands (K, CL). MolNFT v1 #121761 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5I4Z
Type: protein
Length: 148 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Myc proto-oncogene protein
UniProt: P01106
Ligands: K, CL

Structure

x-ray diffraction · 1 distinct chain · 78% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Myc proto-oncogene protein	protein	74	78% helix, 0% strand	P01106

Ligands and binding sites

K · Potassium ion · metal · 2 copies · chains B
CL · Chloride ion · ion · 3 copies · chains A, B
GOL · Glycerol · additive · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

1 interface between chains.

A–B · 1788 Å² buried · 10 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 disulfide (disulfide).

Compared structures

5I4Z · Structure of apo OmoMYC · the same entry in another collection · chain A against A, TM-score 1.00
P01106 · AlphaFold monomer V2.0 prediction for myc proto-oncogene protein (P01106) · a predicted model of the same protein · chain A against A, TM-score 0.93

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P01106
Elsewhere: RCSB PDB 5I4Z · PDBe 5I4Z · UniProt P01106

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