MolNFT v1 · #121358 · protein
Crystal structure of the set domain of the human MLL5 methyltransferase
5HT6 · Histone-lysine N-methyltransferase 2E: “Crystal structure of the set domain of the human MLL5 methyltransferase”. X-ray diffraction, 5 pockets (best druggability 0.45). MolNFT v1 #121358 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5HT6
- Type
- protein
- Length
- 232 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Histone-lysine N-methyltransferase 2E
- EC
- 2.1.1.43
- UniProt
- Q8IZD2
- Pockets
- 5 · best druggability 0.45
Structure
x-ray diffraction · 2 distinct chains · 9% helix, 36% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Histone-lysine N-methyltransferase 2E (EC 2.1.1.43) | protein | 123 | 8% helix, 35% strand | Q8IZD2 |
| B | Histone-lysine N-methyltransferase 2E (EC 2.1.1.43) | protein | 109 | 9% helix, 37% strand | Q8IZD2 |
Pockets
5 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 120 | 0.45 | 0.77 | 19 | empty |
| 2 | 82 | 0.40 | 0.78 | 17 | empty |
| 3 | 88 | 0.38 | 0.76 | 15 | empty |
| 4 | 69 | 0.36 | 0.77 | 13 | empty |
| 5 | 72 | 0.34 | 0.76 | 17 | empty |
Interfaces
1 interface between chains.
- A–B · 775 Ų buried · 9 hydrogen bonds · protein-protein
Compared structures
- 5HT6 · Crystal structure of the SET domain of the human MLL5 methyltransferase · the same entry in another collection · chain A against A, TM-score 1.00
- Q8IZD2 · AlphaFold monomer V2.0 prediction for inactive histone-lysine N-methyltransferase 2E… · a predicted model of the same protein · chain B against A, TM-score 0.94
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8IZD2
- Elsewhere: RCSB PDB 5HT6 · PDBe 5HT6 · UniProt Q8IZD2
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