MolNFT v1 · #121233 · protein

Structure of abna, a GH43 extracellular arabinanase from geobacillus stearothermophilus (a new conformational state)

5HP6: “Structure of abna, a GH43 extracellular arabinanase from geobacillus stearothermophilus (a new conformational…”. X-ray diffraction, 1 ligand (CA), 7 pockets (best druggability 0.61). MolNFT v1 #121233 on GenesisL1: 3D structure…

PDB: 5HP6
Type: protein
Length: 802 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Extracellular arabinanase
UniProt: B3EYN2
Ligands: CA
Pockets: 7 · best druggability 0.61

Structure

x-ray diffraction · 1 distinct chain · 6% helix, 44% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Extracellular arabinanase	protein	802	6% helix, 44% strand	B3EYN2

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A
TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · chains A
PEG · Di(hydroxyethyl)ether · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	324	0.61	0.78	24	empty
2	92	0.54	0.84	27	empty
3	214	0.50	0.76	33	TRS
4	143	0.44	0.76	23	empty
5	135	0.41	0.75	29	empty

Compared structures

5HP6 · Structure of AbnA, a GH43 extracellular arabinanase from Geobacillus stearothermophilus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B3EYN2
Elsewhere: RCSB PDB 5HP6 · PDBe 5HP6 · UniProt B3EYN2

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