MolNFT v1 · #120973 · protein

Structure of pvdo from pseudomonas aeruginosa

5HHA: “Structure of pvdo from pseudomonas aeruginosa”. X-ray diffraction, 1 ligand (CA), 3 pockets (best druggability 0.60). MolNFT v1 #120973 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5HHA
Type: protein
Length: 533 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Pvdo
UniProt: Q9I185
Ligands: CA
Pockets: 3 · best druggability 0.60

Structure

x-ray diffraction · 2 distinct chains · 16% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Pvdo	protein	261	17% helix, 18% strand	Q9I185
B	Pvdo	protein	272	15% helix, 18% strand	Q9I185

Ligands and binding sites

CA · Calcium ion · metal · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	535	0.60	0.74	43	empty
2	119	0.60	0.86	25	empty
3	124	0.58	0.84	24	empty

Interfaces

1 interface between chains.

A–B · 658 Å² buried · 2 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 disulfide (disulfide).

Compared structures

5HHA · Structure of PvdO from Pseudomonas aeruginosa · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9I185
Elsewhere: RCSB PDB 5HHA · PDBe 5HHA · UniProt Q9I185

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.