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MolNFT v1 · #120939 · protein

EGFR (L858R, T790M, V948R) in complex with 1-{(3R,4R)-3-[5-chloro-2- (1-methyl-1H-pyrazol-4-ylamino)-7H-PYRROLO[2,3-D]PYRIMIDIN-4- yloxymethyl]-4-methoxy-pyrrolidin-1-YL}PROPENONE (pf-06459988)

5HG7 · Epidermal growth factor receptor: “EGFR (L858R, T790M, V948R) in complex with 1-{(3R,4R)-3-[5-chloro-2…”. X-ray diffraction, 2 ligands (630, SO4), 1 pocket (best druggability 0.72). MolNFT v1 #120939 on GenesisL1: 3D structure…

PDB
5HG7
Type
protein
Length
280 residues
Chains
1
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Epidermal growth factor receptor
EC
2.7.10.1
UniProt
P00533
Ligands
630, SO4
Pockets
1 · best druggability 0.72

Structure

x-ray diffraction · 1 distinct chain · 40% helix, 21% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AEpidermal growth factor receptor (EC 2.7.10.1)protein28040% helix, 21% strandP00533

Ligands and binding sites

  • 630 · 1-{(3R,4R)-3-[({5-chloro-2-[(1-methyl-1H-pyrazol-4-yl)amino]-7H-pyrrolo[2,3-d]pyrimidin-4-yl}oxy)methyl]-4-methoxypyrrolidin-1-yl}propan-1-one · ligand · chains A
  • SO4 · Sulfate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

PocketVolume (ų)DruggabilityBuriednessLining residuesInside
15650.720.8058630

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

  • 5HG7 · EGFR (L858R, T790M, V948R) in complex with 1-{(3R,4R)-3-[5-Chloro-2-(1-methyl-1H-pyrazol-4… · the same entry in another collection · chain A against A, TM-score 1.00
  • P00533 · AlphaFold monomer V2.0 prediction for epidermal growth factor receptor (P00533) · a predicted model of the same protein · chain A against A, TM-score 0.96

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