MolNFT v1 · #120939 · protein
EGFR (L858R, T790M, V948R) in complex with 1-{(3R,4R)-3-[5-chloro-2- (1-methyl-1H-pyrazol-4-ylamino)-7H-PYRROLO[2,3-D]PYRIMIDIN-4- yloxymethyl]-4-methoxy-pyrrolidin-1-YL}PROPENONE (pf-06459988)
5HG7 · Epidermal growth factor receptor: “EGFR (L858R, T790M, V948R) in complex with 1-{(3R,4R)-3-[5-chloro-2…”. X-ray diffraction, 2 ligands (630, SO4), 1 pocket (best druggability 0.72). MolNFT v1 #120939 on GenesisL1: 3D structure…
- PDB
- 5HG7
- Type
- protein
- Length
- 280 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Epidermal growth factor receptor
- EC
- 2.7.10.1
- UniProt
- P00533
- Ligands
- 630, SO4
- Pockets
- 1 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Epidermal growth factor receptor (EC 2.7.10.1) | protein | 280 | 40% helix, 21% strand | P00533 |
Ligands and binding sites
- 630 · 1-{(3R,4R)-3-[({5-chloro-2-[(1-methyl-1H-pyrazol-4-yl)amino]-7H-pyrrolo[2,3-d]pyrimidin-4-yl}oxy)methyl]-4-methoxypyrrolidin-1-yl}propan-1-one · ligand · chains A
- SO4 · Sulfate ion · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 565 | 0.72 | 0.80 | 58 | 630 |
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 5HG7 · EGFR (L858R, T790M, V948R) in complex with 1-{(3R,4R)-3-[5-Chloro-2-(1-methyl-1H-pyrazol-4… · the same entry in another collection · chain A against A, TM-score 1.00
- P00533 · AlphaFold monomer V2.0 prediction for epidermal growth factor receptor (P00533) · a predicted model of the same protein · chain A against A, TM-score 0.96
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P00533
- Elsewhere: RCSB PDB 5HG7 · PDBe 5HG7 · UniProt P00533
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