MolNFT v1 · #120890 · protein
Pentameric ligand-gated ion channel elic mutant F116A
5HEJ · Gamma-aminobutyric-acid receptor subunit beta-1: “Pentameric ligand-gated ion channel elic mutant F116A”. X-ray diffraction, 20 pockets (best druggability 0.83). MolNFT v1 #120890 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5HEJ
- Type
- protein
- Length
- 3,060 residues
- Chains
- 10
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Gamma-aminobutyric-acid receptor subunit beta-1
- UniProt
- E0SJQ4
- Pockets
- 20 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 34% helix, 33% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D, E, F, G, H, I, J | Gamma-aminobutyric-acid receptor subunit beta-1 | protein | 306 | 34% helix, 33% strand | E0SJQ4 |
Pockets
20 pockets found on a 1 Å grid, 20 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 181 | 0.83 | 0.97 | 20 | empty |
| 2 | 901 | 0.83 | 0.84 | 93 | empty |
| 3 | 184 | 0.82 | 0.96 | 20 | empty |
| 4 | 1045 | 0.82 | 0.83 | 98 | empty |
| 5 | 1055 | 0.82 | 0.83 | 95 | empty |
Interfaces
22 interfaces between chains.
- B–C · 2544 Ų buried · 20 hydrogen bonds · protein-protein
- G–H · 2531 Ų buried · 20 hydrogen bonds · protein-protein
- C–D · 2513 Ų buried · 18 hydrogen bonds · protein-protein
- H–I · 2501 Ų buried · 20 hydrogen bonds · protein-protein
- I–J · 2500 Ų buried · 21 hydrogen bonds · protein-protein
Compared structures
- 5HEJ · Pentameric ligand-gated ion channel ELIC mutant F116A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E0SJQ4
- Elsewhere: RCSB PDB 5HEJ · PDBe 5HEJ · UniProt E0SJQ4
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