MolNFT v1 · #12080 · protein
YAP65 ww domain S24-amino-ethylsulfanyl-acetic acid mutant
1K5R · 65 kda yes-associated protein: “YAP65 ww domain S24-amino-ethylsulfanyl-acetic acid mutant”. Solution nmr, 1 ligand (NH2). MolNFT v1 #12080 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 1K5R
- Type
- protein
- Length
- 50 residues
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 65 kda yes-associated protein; Fragment of wbp-1
- UniProt
- P46937
- Ligands
- NH2
Structure
solution nmr · 2 distinct chains · 0% helix, 8% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 65 kda yes-associated protein | protein | 40 | 0% helix, 10% strand | P46937 |
| B | Fragment of wbp-1 | protein | 10 | 0% helix, 0% strand | — |
Ligands and binding sites
- NH2 · Amino group · ion · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 336 Ų buried · 1 hydrogen bond · protein-protein
Modifications
Observed in the structure: 1 modified (nonstandard).
Compared structures
- 1K5R · YAP65 WW domain S24-Amino-Ethylsulfanyl-Acetic Acid mutant · the same entry in another collection · chain B against B, TM-score 1.00
- P46937 · AlphaFold monomer V2.0 prediction for transcriptional coactivator YAP1 (P46937) · a predicted model of the same protein · chain A against A, TM-score 0.43
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P46937
- Elsewhere: RCSB PDB 1K5R · PDBe 1K5R · UniProt P46937
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