MolNFT v1 · #120742 · protein

Crystal structure of gh family 64 laminaripentaose-producing beta-1,3- glucanase from paenibacillus barengoltzii complexed with laminarihexaose.

5H9Y · Beta-1,3-glucanase: “Crystal structure of gh family 64 laminaripentaose-producing beta-1,3- glucanase from paenibacillus…”. X-ray diffraction, 1 ligand (BGC), 2 pockets (best druggability 0.62). MolNFT v1 #120742 on GenesisL1: 3D…

PDB: 5H9Y
Type: protein
Length: 412 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Beta-1,3-glucanase
EC: 3.2.1.39
Ligands: BGC
Pockets: 2 · best druggability 0.62

Structure

x-ray diffraction · 1 distinct chain · 17% helix, 36% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Beta-1,3-glucanase (EC 3.2.1.39)	protein	412	17% helix, 36% strand	—

Ligands and binding sites

BGC · beta-D-glucopyranose · sugar · 9 copies · chains A
TLA · L(+)-tartaric acid · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	444	0.62	0.76	40	empty
2	134	0.43	0.76	22	BGC

Compared structures

5H9Y · Crystal structure of GH family 64 laminaripentaose-producing beta-1,3-glucanase from… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 5H9Y · PDBe 5H9Y

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