MolNFT v1 · #120700 · protein
Crystal structure of mycobacterium tuberculosis malate synthase C619A, G459A mutant in complex with product malate
5H8M · Malate synthase G: “Crystal structure of mycobacterium tuberculosis malate synthase C619A, G459A mutant in complex with product…”. X-ray diffraction, 2 ligands (LMR, MG), 5 pockets (best druggability 0.72). MolNFT v1 #120700 on…
- PDB
- 5H8M
- Type
- protein
- Length
- 706 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Malate synthase G
- EC
- 2.3.3.9
- UniProt
- P9WK17
- Ligands
- LMR, MG
- Pockets
- 5 · best druggability 0.72
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Malate synthase G (EC 2.3.3.9) | protein | 706 | 43% helix, 18% strand | P9WK17 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 192 | 0.72 | 0.88 | 41 | MG, LMR |
| 2 | 428 | 0.66 | 0.79 | 39 | empty |
| 3 | 136 | 0.54 | 0.81 | 29 | empty |
| 4 | 50 | 0.41 | 0.83 | 17 | empty |
| 5 | 53 | 0.36 | 0.79 | 13 | empty |
Compared structures
- 5H8M · Crystal structure of Mycobacterium tuberculosis malate synthase C619A, G459A mutant in… · the same entry in another collection · chain A against A, TM-score 1.00
- P9WK17 · AlphaFold monomer V2.0 prediction for malate synthase G (P9WK17) · a predicted model of the same protein · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P9WK17
- Elsewhere: RCSB PDB 5H8M · PDBe 5H8M · UniProt P9WK17
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