MolNFT v1 · #120660 · protein
Crystal structure of the BCL6 btb domain in complex with F1324
5H7G · B-cell lymphoma 6 protein: “Crystal structure of the BCL6 btb domain in complex with F1324”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.38). MolNFT v1 #120660 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5H7G
- Type
- protein
- Length
- 270 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- B-cell lymphoma 6 protein; F1324 peptide
- UniProt
- P41182
- Ligands
- SO4
- Pockets
- 2 · best druggability 0.38
Structure
x-ray diffraction · 2 distinct chains · 48% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | B-cell lymphoma 6 protein | protein | 122 | 53% helix, 16% strand | P41182 |
| C, D | F1324 peptide | protein | 13 | 0% helix, 23% strand | — |
Ligands and binding sites
- SO4 · Sulfate ion · ion · 2 copies · chains A, C, B, D
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 106 | 0.38 | 0.75 | 26 | empty |
| 2 | 54 | 0.32 | 0.77 | 15 | empty |
Interfaces
5 interfaces between chains.
- A–B · 1654 Ų buried · 14 hydrogen bonds · protein-protein
- A–C · 708 Ų buried · 17 hydrogen bonds · protein-protein
- B–D · 666 Ų buried · 13 hydrogen bonds · protein-protein
- A–D · 426 Ų buried · 3 hydrogen bonds · protein-protein
- B–C · 414 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P41182
- Elsewhere: RCSB PDB 5H7G · PDBe 5H7G · UniProt P41182
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