MolNFT v1 · #120653 · protein

Crystal structure of a repeat protein with three protein a repeat module

5H79 · Immunoglobulin G-binding protein a: “Crystal structure of a repeat protein with three protein a repeat module”. X-ray diffraction, 1 pocket (best druggability 0.34). MolNFT v1 #120653 on GenesisL1: 3D structure, binding sites and…

PDB: 5H79
Type: protein
Length: 283 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Immunoglobulin G-binding protein a
UniProt: P38507
Pockets: 1 · best druggability 0.34

Structure

x-ray diffraction · 2 distinct chains · 82% helix, 0% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
D	Immunoglobulin G-binding protein a	protein	142	81% helix, 0% strand	P38507
C	Immunoglobulin G-binding protein a	protein	141	83% helix, 0% strand	P38507

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	83	0.34	0.75	18	empty

Interfaces

1 interface between chains.

D–C · 583 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

5H79 · Crystal structure of a repeat protein with three Protein A repeat module · the same entry in another collection · chain D against D, TM-score 1.00
P38507 · AlphaFold monomer V2.0 prediction for immunoglobulin G-binding protein a (P38507) · a predicted model of the same protein · chain D against A, TM-score 0.42

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P38507
Elsewhere: RCSB PDB 5H79 · PDBe 5H79 · UniProt P38507

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