MolNFT v1 · #120620 · protein
Crystal structure of the bacillus subtilis smc head domain complexed with the cognate scpa C-terminal domain
5H66 · Chromosome partition protein smc: “Crystal structure of the bacillus subtilis smc head domain complexed with the cognate scpa C-terminal domain”. X-ray diffraction, 1 pocket (best druggability 0.51). MolNFT v1 #120620 on GenesisL1…
- PDB
- 5H66
- Type
- protein
- Length
- 435 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Chromosome partition protein smc; Segregation and condensation protein a
- UniProt
- P51834, P35154
- Pockets
- 1 · best druggability 0.51
Structure
x-ray diffraction · 3 distinct chains · 44% helix, 23% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Chromosome partition protein smc | protein | 187 | 37% helix, 26% strand | P51834 |
| B | Chromosome partition protein smc | protein | 181 | 50% helix, 23% strand | P51834 |
| C | Segregation and condensation protein a | protein | 67 | 48% helix, 18% strand | P35154 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 169 | 0.51 | 0.78 | 27 | empty |
Interfaces
3 interfaces between chains.
- A–B · 3506 Ų buried · 50 hydrogen bonds · protein-protein
- B–C · 1006 Ų buried · 9 hydrogen bonds · protein-protein
- A–C · 267 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 5H66 · Crystal structure of the Bacillus subtilis SMC head domain complexed with the cognate… · the same entry in another collection · chain B against B, TM-score 1.00
- P51834 · AlphaFold monomer V2.0 prediction for chromosome partition protein smc (P51834) · a predicted model of the same protein · chain B against A, TM-score 0.93
- P35154 · AlphaFold monomer V2.0 prediction for segregation and condensation protein a (P35154) · a predicted model of the same protein · chain C against A, TM-score 0.81
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P51834
- Every structure of UniProt P35154
- Elsewhere: RCSB PDB 5H66 · PDBe 5H66 · UniProt P51834 · UniProt P35154
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