MolNFT v1 · #120501 · protein
Crystal structure of OSH1 ord domain in complex with ergosterol
5H2D · KLLA0C04147P: “Crystal structure of OSH1 ord domain in complex with ergosterol”. X-ray diffraction, 2 ligands (ERG, SO4), 6 pockets (best druggability 0.84). MolNFT v1 #120501 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 5H2D
- Type
- protein
- Length
- 418 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- KLLA0C04147P
- UniProt
- Q6CUK7
- Ligands
- ERG, SO4
- Pockets
- 6 · best druggability 0.84
Structure
x-ray diffraction · 1 distinct chain · 25% helix, 28% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | KLLA0C04147P | protein | 418 | 25% helix, 28% strand | Q6CUK7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 290 | 0.84 | 0.95 | 32 | ERG |
| 2 | 215 | 0.54 | 0.78 | 43 | SO4 |
| 3 | 163 | 0.47 | 0.76 | 28 | empty |
| 4 | 104 | 0.45 | 0.79 | 18 | empty |
| 5 | 71 | 0.35 | 0.76 | 18 | empty |
Compared structures
- 5H2D · Crystal structure of Osh1 ORD domain in complex with ergosterol · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6CUK7
- Elsewhere: RCSB PDB 5H2D · PDBe 5H2D · UniProt Q6CUK7
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