MolNFT v1 · #120335 · protein

Crystal structure of glycine sarcosine N-methyltransferase from methanohalophilus portucalensis in complex with S-adenosylmethionine and sarcosine

5GWX: “Crystal structure of glycine sarcosine N-methyltransferase from methanohalophilus portucalensis in complex…”. X-ray diffraction, 2 ligands (SAM, SAR), 2 pockets (best druggability 0.78). MolNFT v1 #120335 on GenesisL1: 3D structure…

PDB: 5GWX
Type: protein
Length: 249 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Glycine sarcosine N-methyltransferase
UniProt: F6KV61
Ligands: SAM, SAR
Pockets: 2 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 41% helix, 29% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Glycine sarcosine N-methyltransferase	protein	249	41% helix, 29% strand	F6KV61

Ligands and binding sites

SAM · S-adenosylmethionine · ligand · chains A
SAR · Sarcosine · ligand · chains A
EDO · 1,2-ethanediol · additive · 4 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	750	0.78	0.82	62	SAM, SAR
2	53	0.58	0.91	18	EDO

Compared structures

5GWX · Crystal structure of glycine sarcosine N-methyltransferase from Methanohalophilus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt F6KV61
Elsewhere: RCSB PDB 5GWX · PDBe 5GWX · UniProt F6KV61

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