MolNFT v1 · #12024 · protein
Crystal structure of the type III secretory domain of yersinia yoph reveals a domain-swapped dimer
1K46 · Protein-tyrosine phosphatase yoph: “Crystal structure of the type III secretory domain of yersinia yoph reveals a domain-swapped dimer”. X-ray diffraction, 1 pocket (best druggability 0.48). MolNFT v1 #12024 on GenesisL1: 3D…
- PDB
- 1K46
- Type
- protein
- Length
- 124 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Protein-tyrosine phosphatase yoph
- EC
- 3.1.3.48
- UniProt
- P08538
- Pockets
- 1 · best druggability 0.48
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 13% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Protein-tyrosine phosphatase yoph (EC 3.1.3.48) | protein | 124 | 46% helix, 13% strand | P08538 |
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 153 | 0.48 | 0.77 | 23 | empty |
Compared structures
- 1K46 · Crystal Structure of the Type III Secretory Domain of Yersinia YopH Reveals a… · the same entry in another collection · chain A against A, TM-score 1.00
- P08538 · AlphaFold monomer V2.0 prediction for tyrosine-protein phosphatase yoph (P08538) · a predicted model of the same protein · chain A against A, TM-score 0.66
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P08538
- Elsewhere: RCSB PDB 1K46 · PDBe 1K46 · UniProt P08538
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