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Crystal structure of the type III secretory domain of yersinia yoph reveals a domain-swapped dimer

Analyse Crystal structure of the type III secretory domain of yersinia yoph reveals a… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1K46
Type: protein
Length: 124 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein-tyrosine phosphatase yoph
EC: 3.1.3.48
UniProt: P08538
Pockets: 1 · best druggability 0.48

Structure

x-ray diffraction · 1 distinct chain · 46% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Protein-tyrosine phosphatase yoph (EC 3.1.3.48)	protein	124	46% helix, 13% strand	P08538

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	153	0.48	0.77	23	empty

Compared structures

1K46 · Crystal Structure of the Type III Secretory Domain of Yersinia YopH Reveals a… · the same entry in another collection · chain A against A, TM-score 1.00
P08538 · AlphaFold monomer V2.0 prediction for tyrosine-protein phosphatase yoph (P08538) · a predicted model of the same protein · chain A against A, TM-score 0.66

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P08538
Elsewhere: RCSB PDB 1K46 · PDBe 1K46 · UniProt P08538

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