MolNFT v1 · #120053 · protein

Crystal structure of a Z-ring associated protein from salmonella typhimurium

5GNP · Cell division protein zapd: “Crystal structure of a Z-ring associated protein from salmonella typhimurium”. X-ray diffraction, 2 pockets (best druggability 0.35). MolNFT v1 #120053 on GenesisL1: 3D structure, binding sites and…

PDB: 5GNP
Type: protein
Length: 245 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cell division protein zapd
UniProt: P67693
Pockets: 2 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 51% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cell division protein zapd	protein	245	51% helix, 20% strand	P67693

Ligands and binding sites

MLI · Malonate ion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	88	0.35	0.74	11	empty
2	54	0.29	0.75	11	empty

Compared structures

5GNP · Crystal structure of a Z-ring associated protein from Salmonella typhimurium · the same entry in another collection · chain A against A, TM-score 1.00
P67693 · AlphaFold monomer V2.0 prediction for cell division protein zapd (P67693) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P67693
Elsewhere: RCSB PDB 5GNP · PDBe 5GNP · UniProt P67693

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