MolNFT v1 · #119741 · protein
Crystal structure of the COHSCAC2-xdoccipa type II complex from clostridium thermocellum
5G5D · Cellulosome anchoring protein cohesin region: “Crystal structure of the COHSCAC2-xdoccipa type II complex from clostridium thermocellum”. X-ray diffraction, 1 ligand (CA), 1 pocket (best druggability 0.53). MolNFT v1 #119741 on…
- PDB
- 5G5D
- Type
- protein
- Length
- 316 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cellulosome anchoring protein cohesin region; Cellulosomal-scaffolding protein a
- UniProt
- A0A0U3TQ90, Q06851
- Ligands
- CA
- Pockets
- 1 · best druggability 0.53
Structure
x-ray diffraction · 2 distinct chains · 12% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cellulosome anchoring protein cohesin region | protein | 160 | 6% helix, 39% strand | A0A0U3TQ90 |
| B | Cellulosomal-scaffolding protein a | protein | 156 | 19% helix, 36% strand | Q06851 |
Ligands and binding sites
- CA · Calcium ion · metal · 2 copies · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 126 | 0.53 | 0.81 | 23 | empty |
Interfaces
1 interface between chains.
- A–B · 873 Ų buried · 3 hydrogen bonds · protein-protein
Compared structures
- 5G5D · Crystal Structure of the CohScaC2-XDocCipA type II complex from Clostridium thermocellum · the same entry in another collection · chain A against A, TM-score 1.00
- Q06851 · AlphaFold monomer V2.0 prediction for cellulosomal-scaffolding protein a (Q06851) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A0A0U3TQ90
- Every structure of UniProt Q06851
- Elsewhere: RCSB PDB 5G5D · PDBe 5G5D · UniProt A0A0U3TQ90 · UniProt Q06851
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.