MolNFT v1 · #119635 · protein

Structure of spin-labelled T4 lysozyme mutant L118C-R1 at room temperature

5G27 · Endolysin: “Structure of spin-labelled T4 lysozyme mutant L118C-R1 at room temperature”. X-ray diffraction, 3 ligands (MTN, NA, CL), 1 pocket (best druggability 0.51). MolNFT v1 #119635 on GenesisL1: 3D structure, binding sites and…

PDB: 5G27
Type: protein
Length: 164 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Endolysin
EC: 3.2.1.17
UniProt: P00720
Ligands: MTN, NA, CL
Pockets: 1 · best druggability 0.51

Structure

x-ray diffraction · 1 distinct chain · 62% helix, 9% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Endolysin (EC 3.2.1.17)	protein	164	62% helix, 9% strand	P00720

Ligands and binding sites

MTN · S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate · ligand · chains A
NA · Sodium ion · metal · chains A
CL · Chloride ion · ion · chains A
HED · 2-hydroxyethyl disulfide · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	234	0.51	0.76	29	NA

Modifications

Observed in the structure: 1 covalent (covalent ligand).

Compared structures

5G27 · Structure of Spin-labelled T4 lysozyme mutant L118C-R1 at Room Temperature · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P00720
Elsewhere: RCSB PDB 5G27 · PDBe 5G27 · UniProt P00720

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