MolNFT v1 · #119582 · protein
Crystal structure of danio rerio HDAC6 CD2 in complex with ( S)-trichostatin a
5G0H: “Crystal structure of danio rerio HDAC6 CD2 in complex with ( S)-trichostatin a”. X-ray diffraction, 3 ligands (E1Z, K, ZN). MolNFT v1 #119582 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5G0H
- Type
- protein
- Length
- 360 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- HDAC6
- UniProt
- F8W4B7
- Ligands
- E1Z, K, ZN
Structure
x-ray diffraction · 1 distinct chain · 43% helix, 14% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | HDAC6 | protein | 360 | 43% helix, 14% strand | F8W4B7 |
Ligands and binding sites
- E1Z · S-Trichostatin A · ligand · chains A
- K · Potassium ion · metal · 2 copies · chains A
- ZN · Zinc ion · metal · chains A
- EDO · 1,2-ethanediol · additive · 10 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5G0H · Crystal structure of Danio rerio HDAC6 CD2 in complex with (S)- trichostatin A · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt F8W4B7
- Elsewhere: RCSB PDB 5G0H · PDBe 5G0H · UniProt F8W4B7
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