MolNFT v1 · #119575 · protein

Crystal structure of drosophila ncs-1 bound to chlorpromazine

5G08 · Frequenin 2: “Crystal structure of drosophila ncs-1 bound to chlorpromazine”. X-ray diffraction, 2 ligands (Z80, CA), 3 pockets (best druggability 0.59). MolNFT v1 #119575 on GenesisL1: 3D structure, binding sites and pockets in…

PDB: 5G08
Type: protein
Length: 180 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Frequenin 2
UniProt: Q9VWX8
Ligands: Z80, CA
Pockets: 3 · best druggability 0.59

Structure

x-ray diffraction · 1 distinct chain · 64% helix, 4% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Frequenin 2	protein	180	64% helix, 4% strand	Q9VWX8

Ligands and binding sites

Z80 · 3-(2-chloro-10H-phenothiazin-10-yl)-N,N-dimethylpropan-1-amine · ligand · chains A
CA · Calcium ion · metal · 3 copies · chains A
GOL · Glycerol · additive · 2 copies · chains A
EDO · 1,2-ethanediol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	339	0.59	0.76	31	Z80, GOL, EDO
2	84	0.38	0.77	15	empty
3	52	0.36	0.80	12	empty

Compared structures

5G08 · Crystal structure of Drosophila NCS-1 bound to chlorpromazine · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9VWX8
Elsewhere: RCSB PDB 5G08 · PDBe 5G08 · UniProt Q9VWX8

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.