MolNFT v1 · #11953 · protein
Crystal structure of the opca outer membrane ADHESIN/INVASIN from neisseria meningitidis
1K24 · Outer membrane protein: “Crystal structure of the opca outer membrane ADHESIN/INVASIN from neisseria meningitidis”. X-ray diffraction, 1 ligand (ZN), 3 pockets (best druggability 0.86). MolNFT v1 #11953 on GenesisL1: 3D structure…
- PDB
- 1K24
- Type
- protein
- Length
- 249 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Outer membrane protein
- UniProt
- Q9AE79
- Ligands
- ZN
- Pockets
- 3 · best druggability 0.86
Structure
x-ray diffraction · 1 distinct chain · 1% helix, 69% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Outer membrane protein | protein | 249 | 1% helix, 69% strand | Q9AE79 |
Ligands and binding sites
- ZN · Zinc ion · metal · 3 copies · chains A
- 1PE · Pentaethylene glycol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 366 | 0.86 | 0.95 | 72 | empty |
| 2 | 237 | 0.58 | 0.79 | 26 | empty |
| 3 | 233 | 0.56 | 0.79 | 30 | empty |
Compared structures
- 1K24 · Crystal Structure of the OpcA Outer Membrane Adhesin/Invasin from Neisseria meningitidis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q9AE79
- Elsewhere: RCSB PDB 1K24 · PDBe 1K24 · UniProt Q9AE79
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