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Crystal structure of the opca outer membrane ADHESIN/INVASIN from neisseria meningitidis

Analyse Crystal structure of the opca outer membrane ADHESIN/INVASIN from neisseria… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 1K24
Type: protein
Length: 249 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Outer membrane protein
UniProt: Q9AE79
Ligands: ZN
Pockets: 3 · best druggability 0.86

Structure

x-ray diffraction · 1 distinct chain · 1% helix, 69% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Outer membrane protein	protein	249	1% helix, 69% strand	Q9AE79

Ligands and binding sites

ZN · Zinc ion · metal · 3 copies · chains A
1PE · Pentaethylene glycol · additive · 2 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	366	0.86	0.95	72	empty
2	237	0.58	0.79	26	empty
3	233	0.56	0.79	30	empty

Compared structures

1K24 · Crystal Structure of the OpcA Outer Membrane Adhesin/Invasin from Neisseria meningitidis · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9AE79
Elsewhere: RCSB PDB 1K24 · PDBe 1K24 · UniProt Q9AE79

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