MolNFT v1 · #119415 · protein
Crystal structure of helicobacter pylori beta clamp in complex with 3, 4-difluorobenzamide
5FVE · DNA polymerase III subunit beta: “Crystal structure of helicobacter pylori beta clamp in complex with 3, 4-difluorobenzamide”. X-ray diffraction, 1 ligand (2HO). MolNFT v1 #119415 on GenesisL1: 3D structure, binding sites and…
- PDB
- 5FVE
- Type
- protein
- Length
- 367 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA polymerase III subunit beta
- EC
- 2.7.7.7
- UniProt
- O25242
- Ligands
- 2HO
Structure
x-ray diffraction · 1 distinct chain · 22% helix, 41% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA polymerase III subunit beta (EC 2.7.7.7) | protein | 367 | 22% helix, 41% strand | O25242 |
Ligands and binding sites
- 2HO · 3,4-difluorobenzamide · ligand · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 5FVE · Crystal Structure of Helicobacter pylori beta clamp in complex with 3, 4-Difluorobenzamide · the same entry in another collection · chain A against A, TM-score 1.00
- O25242 · AlphaFold monomer V2.0 prediction for beta sliding clamp (O25242) · a predicted model of the same protein · chain A against A, TM-score 0.98
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O25242
- Elsewhere: RCSB PDB 5FVE · PDBe 5FVE · UniProt O25242
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