MolNFT v1 · #119350 · protein
Crystal structure of the GLUA2 K738M-T744K lbd in complex with glutamate (zinc form)
5FTH · Glutamate receptor 2: “Crystal structure of the GLUA2 K738M-T744K lbd in complex with glutamate (zinc form)”. X-ray diffraction, 2 ligands (GLU, ZN), 7 pockets (best druggability 0.79). MolNFT v1 #119350 on GenesisL1: 3D structure…
- PDB
- 5FTH
- Type
- protein
- Length
- 751 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Glutamate receptor 2
- UniProt
- P19491
- Ligands
- GLU, ZN
- Pockets
- 7 · best druggability 0.79
Structure
x-ray diffraction · 3 distinct chains · 37% helix, 21% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Glutamate receptor 2 | protein | 248 | 37% helix, 21% strand | P19491 |
| B | Glutamate receptor 2 | protein | 249 | 37% helix, 20% strand | P19491 |
| C | Glutamate receptor 2 | protein | 254 | 37% helix, 21% strand | P19491 |
Ligands and binding sites
- GLU · Glutamic acid · ligand · 3 copies · chains A, B, C
- ZN · Zinc ion · metal · 5 copies · chains A, C, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
7 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 770 | 0.79 | 0.82 | 81 | empty |
| 2 | 604 | 0.72 | 0.80 | 46 | empty |
| 3 | 203 | 0.60 | 0.82 | 30 | empty |
| 4 | 183 | 0.41 | 0.73 | 31 | empty |
| 5 | 87 | 0.37 | 0.76 | 23 | empty |
Interfaces
3 interfaces between chains.
- A–B · 817 Ų buried · 13 hydrogen bonds · protein-protein
- A–C · 326 Ų buried · 5 hydrogen bonds · protein-protein
- B–C · 17 Ų buried · 0 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 3 disulfide (disulfide).
Compared structures
- 5FTH · Crystal structure of the GluA2 K738M-T744K LBD in complex with glutamate (zinc form) · the same entry in another collection · chain A against A, TM-score 1.00
- P19491 · AlphaFold monomer V2.0 prediction for glutamate receptor 2 (P19491) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P19491
- Elsewhere: RCSB PDB 5FTH · PDBe 5FTH · UniProt P19491
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