MolNFT v1 · #119202 · protein
Humanised monomeric rada in complex with fhaa tetrapeptide
5FOX · DNA repair and recombination protein rada: “Humanised monomeric rada in complex with fhaa tetrapeptide”. X-ray diffraction, 3 ligands (ACE, NH2, PO4), 2 pockets (best druggability 0.42). MolNFT v1 #119202 on GenesisL1: 3D structure…
- PDB
- 5FOX
- Type
- protein
- Length
- 226 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA repair and recombination protein rada; Fhaa peptide
- EC
- 3.6.4.-
- UniProt
- O74036
- Ligands
- ACE, NH2, PO4
- Pockets
- 2 · best druggability 0.42
Structure
x-ray diffraction · 2 distinct chains · 36% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA repair and recombination protein rada (EC 3.6.4.-) | protein | 222 | 37% helix, 26% strand | O74036 |
| C | Fhaa peptide | protein | 4 | 0% helix, 50% strand | — |
Ligands and binding sites
- ACE · Acetyl group · ligand · chains A, C
- NH2 · Amino group · ion · chains A, C
- PO4 · Phosphate ion · ion · chains A
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 89 | 0.42 | 0.79 | 17 | empty |
| 2 | 71 | 0.32 | 0.75 | 21 | PO4 |
Interfaces
1 interface between chains.
- A–C · 315 Ų buried · 4 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 1 covalent (covalent ligand).
Compared structures
- 5FOX · Humanised monomeric rada in complex with fhaa tetrapeptide · the same entry in another collection · chain A against A, TM-score 1.00
- O74036 · AlphaFold monomer V2.0 prediction for DNA repair and recombination protein rada (O74036) · a predicted model of the same protein · chain A against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O74036
- Elsewhere: RCSB PDB 5FOX · PDBe 5FOX · UniProt O74036
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