MolNFT v1 · #332119 · protein
AlphaFold monomer V2.0 prediction for DNA repair and recombination protein rada (O74036)
O74036: “AlphaFold monomer V2.0 prediction for DNA repair and recombination protein rada (O74036)”. 4 pockets (best druggability 0.35). MolNFT v1 #332119 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- Accession
- O74036
- Type
- protein
- Length
- 349 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB44F19a0cb161828322eEEd13F55d4C3C34938d2
- Molecule
- DNA repair and recombination protein rada
- UniProt
- O74036
- Pockets
- 4 · best druggability 0.35
Structure
1 distinct chain · 39% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA repair and recombination protein rada | protein | 349 | 39% helix, 19% strand | O74036 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 78 | 0.35 | 0.76 | 18 | empty |
| 2 | 79 | 0.34 | 0.75 | 16 | empty |
| 3 | 58 | 0.28 | 0.74 | 15 | empty |
| 4 | 54 | 0.24 | 0.72 | 15 | empty |
Compared structures
- 1PZN · RAD51 (rada) · an experimental structure of the same protein · chain A against A, TM-score 0.72
- 1PZN · Rad51 (RadA) · an experimental structure of the same protein · chain A against A, TM-score 0.72
- 5JEC · Apo-structure of humanised RadA-mutant humRadA33F · an experimental structure of the same protein · chain A against B, TM-score 0.65
- 5JEC · Apo-structure of humanised rada-mutant HUMRADA33F · an experimental structure of the same protein · chain A against B, TM-score 0.65
- 5JED · Apo-structure of humanised RadA-mutant humRadA28 · an experimental structure of the same protein · chain A against A, TM-score 0.64
- 5JED · Apo-structure of humanised rada-mutant HUMRADA28 · an experimental structure of the same protein · chain A against A, TM-score 0.64
- 6XTW · HUMRADA33F in complex with peptidic inhibitor 6 · an experimental structure of the same protein · chain A against B, TM-score 0.64
- 4D6P · Rada C-terminal ATPase domain from pyrococcus furiosus bound to amppnp · an experimental structure of the same protein · chain A against B, TM-score 0.64
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O74036
- Elsewhere: UniProt O74036 · AlphaFold DB O74036
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