Research workbench
AlphaFold monomer V2.0 prediction for DNA repair and recombination protein rada (O74036)
Analyse AlphaFold monomer V2.0 prediction for DNA repair and recombination protein rada… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.
- Accession
- O74036
- Type
- protein
- Length
- 349 residues
- Chains
- 1
- Collection
- MolNFT v1 / AlphaFold
- Contract
- 0xBf7491af3407816DFa88a5EA4c82e8A2B1D721eD
- Owner
- 0xB44F19a0cb161828322eEEd13F55d4C3C34938d2
- Molecule
- DNA repair and recombination protein rada
- UniProt
- O74036
- Pockets
- 4 · best druggability 0.35
Structure
1 distinct chain · 39% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | DNA repair and recombination protein rada | protein | 349 | 39% helix, 19% strand | O74036 |
Pockets
4 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 78 | 0.35 | 0.76 | 18 | empty |
| 2 | 79 | 0.34 | 0.75 | 16 | empty |
| 3 | 58 | 0.28 | 0.74 | 15 | empty |
| 4 | 54 | 0.24 | 0.72 | 15 | empty |
Compared structures
- 1PZN · RAD51 (rada) · an experimental structure of the same protein · chain A against A, TM-score 0.72
- 1PZN · Rad51 (RadA) · an experimental structure of the same protein · chain A against A, TM-score 0.72
- 5JEC · Apo-structure of humanised RadA-mutant humRadA33F · an experimental structure of the same protein · chain A against B, TM-score 0.65
- 5JEC · Apo-structure of humanised rada-mutant HUMRADA33F · an experimental structure of the same protein · chain A against B, TM-score 0.65
- 5JED · Apo-structure of humanised RadA-mutant humRadA28 · an experimental structure of the same protein · chain A against A, TM-score 0.64
- 5JED · Apo-structure of humanised rada-mutant HUMRADA28 · an experimental structure of the same protein · chain A against A, TM-score 0.64
- 6XTW · HUMRADA33F in complex with peptidic inhibitor 6 · an experimental structure of the same protein · chain A against B, TM-score 0.64
- 6XTW · HumRadA33F in complex with peptidic inhibitor 6 · an experimental structure of the same protein · chain A against B, TM-score 0.64
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O74036
- Elsewhere: UniProt O74036 · AlphaFold DB O74036
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