MolNFT v1 · #119126 · protein

Crystal structure and proteomics analysis of empty virus like particles of cowpea mosaic virus

5FMO: “Crystal structure and proteomics analysis of empty virus like particles of cowpea mosaic virus”. X-ray diffraction, 7 pockets (best druggability 0.53). MolNFT v1 #119126 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 5FMO
Type: protein
Length: 562 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Empty virus like particles of cowpea mosaic virus
UniProt: Q66170
Pockets: 7 · best druggability 0.53

Structure

x-ray diffraction · 2 distinct chains · 8% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
L	Empty virus like particles of cowpea mosaic virus	protein	369	9% helix, 41% strand	Q66170
S	Empty virus like particles of cowpea mosaic virus	protein	193	6% helix, 42% strand	Q66170

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	98	0.53	0.83	18	empty
2	197	0.51	0.77	37	empty
3	122	0.43	0.76	23	empty
4	76	0.39	0.78	18	empty
5	63	0.35	0.77	13	empty

Interfaces

1 interface between chains.

L–S · 1791 Å² buried · 24 hydrogen bonds · protein-protein

Compared structures

5FMO · Crystal structure and proteomics analysis of empty virus like particles of Cowpea mosaic… · the same entry in another collection · chain L against L, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q66170
Elsewhere: RCSB PDB 5FMO · PDBe 5FMO · UniProt Q66170

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