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Crystal structure and proteomics analysis of empty virus like particles of cowpea mosaic virus

Analyse Crystal structure and proteomics analysis of empty virus like particles of… in the GL1X research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides, crosslinks and neighbours on the 3D structure.

PDB: 5FMO
Type: protein
Length: 562 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Empty virus like particles of cowpea mosaic virus
UniProt: Q66170
Pockets: 7 · best druggability 0.53

Structure

x-ray diffraction · 2 distinct chains · 8% helix, 41% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
L	Empty virus like particles of cowpea mosaic virus	protein	369	9% helix, 41% strand	Q66170
S	Empty virus like particles of cowpea mosaic virus	protein	193	6% helix, 42% strand	Q66170

Pockets

7 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	98	0.53	0.83	18	empty
2	197	0.51	0.77	37	empty
3	122	0.43	0.76	23	empty
4	76	0.39	0.78	18	empty
5	63	0.35	0.77	13	empty

Interfaces

1 interface between chains.

L–S · 1791 Å² buried · 24 hydrogen bonds · protein-protein

Compared structures

5FMO · Crystal structure and proteomics analysis of empty virus like particles of Cowpea mosaic… · the same entry in another collection · chain L against L, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q66170
Elsewhere: RCSB PDB 5FMO · PDBe 5FMO · UniProt Q66170

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