MolNFT v1 · #118664 · protein
Crystal structure of a crenomytilus grayanus lectin in complex with galactosamine
5F8Y · GALNAC/GAL-specific lectin: “Crystal structure of a crenomytilus grayanus lectin in complex with galactosamine”. X-ray diffraction, 1 ligand (X6X). MolNFT v1 #118664 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 5F8Y
- Type
- protein
- Length
- 298 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- GALNAC/GAL-specific lectin
- UniProt
- H2FH31
- Ligands
- X6X
Structure
x-ray diffraction · 1 distinct chain · 6% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | GALNAC/GAL-specific lectin | protein | 149 | 6% helix, 43% strand | H2FH31 |
Ligands and binding sites
- X6X · 2-amino-2-deoxy-alpha-D-galactopyranose · ligand · 6 copies · chains A, B
- GOL · Glycerol · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 737 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 5F8Y · Crystal structure of a Crenomytilus grayanus lectin in complex with galactosamine · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt H2FH31
- Elsewhere: RCSB PDB 5F8Y · PDBe 5F8Y · UniProt H2FH31
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